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Biochemistry - NEETMDS- courses
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Biochemistry

These cannot be synthesized by the body and must be obtained from food.

Essential Amino Acids Key Functions
Histidine Growth, tissue repair, precursor for histamine
Isoleucine Muscle metabolism, immune function
Leucine Muscle repair, protein synthesis
Lysine Collagen formation, calcium absorption
Methionine Antioxidant, methyl group donor
Phenylalanine Precursor for neurotransmitters (dopamine, epinephrine)
Threonine Tooth enamel, collagen, immune function
Tryptophan Precursor for serotonin and melatonin
Valine Muscle energy, tissue repair

Found in: Meat, eggs, dairy, soy, legumes, quinoa

These are normally non-essential but become essential during stress, illness, or in infants.

Conditionally Essential When Needed
Arginine Growth, trauma, immune stress
Cysteine Liver disease, oxidative stress
Glutamine Critical illness, burns
Tyrosine PKU (phenylketonuria) patients
Proline, Glycine Wound healing, collagen synthesis

VITAMIN C: ASCORBIC ACID, ASCORBATE

Vitamin C benefits the body by holding cells together through collagen synthesis; collagen is a connective tissue that holds muscles, bones, and other tissues together. Vitamin C also aids in wound healing, bone and tooth formation, strengthening blood vessel walls, improving immune system function, increasing absorption and utilization of iron, and acting as an antioxidant.

RDA The Recommended Dietary Allowance (RDA) for Vitamin C is 90 mg/day for adult males and 75 mg/day for adult females

Vitamin C Deficiency

Severe vitamin C deficiency result in the disease known as scurvy, causing a loss of collagen strength throughout the body. Loss of collagen results in loose teeth, bleeding and swollen gums, and improper wound healing.

Enzyme Kinetics

Enzymes are protein catalysts that, like all catalysts, speed up the rate of a chemical reaction without being used up in the process. They achieve their effect by temporarily binding to the substrate and, in doing so, lowering the activation energy needed to convert it to a product.

The rate at which an enzyme works is influenced by several factors, e.g.,

  • the concentration of substrate molecules (the more of them available, the quicker the enzyme molecules collide and bind with them). The concentration of substrate is designated [S] and is expressed in unit of molarity.
  • the temperature. As the temperature rises, molecular motion - and hence collisions between enzyme and substrate - speed up. But as enzymes are proteins, there is an upper limit beyond which the enzyme becomes denatured and ineffective.
  • the presence of inhibitors.
    • competitive inhibitors are molecules that bind to the same site as the substrate - preventing the substrate from binding as they do so - but are not changed by the enzyme.
    • noncompetitive inhibitors are molecules that bind to some other site on the enzyme reducing its catalytic power.
  • pH. The conformation of a protein is influenced by pH and as enzyme activity is crucially dependent on its conformation, its activity is likewise affected.

The study of the rate at which an enzyme works is called enzyme kinetics.

1. Kwashiorkor

  • Cause: Severe protein deficiency with adequate or near-adequate calorie intake.

  • Typical Age: 1–3 years (post-weaning)

  • Clinical Features:

    • Edema (due to hypoalbuminemia)

    • Moon face and swollen abdomen

    • Dermatosis and skin depigmentation

    • Fatty liver

    • Apathy and irritability

  • Key Insight: Protein is lacking, but energy (carbohydrates) may be sufficient.

2. Marasmus

  • Cause: Deficiency of both protein and calories

  • Typical Age: Infants under 1 year

  • Clinical Features:

    • Severe wasting and muscle loss

    • Prominent ribs and sunken eyes

    • No edema

    • Alert but irritable

  • Key Insight: Total energy deficit leads to extreme emaciation.

Insulin

Insulin is a polypeptide hormone synthesized in the pancreas by β-cells, which construct a single chain molecule called proinsulin. 

Insulin, secreted by the β-cells of the pancreas in response to rising blood glucose levels, is a signal that glucose is abundant.

Insulin binds to a specific receptor on the cell surface and exerts its metabolic effect by a signaling pathway that involves a receptor tyrosine kinase phosphorylation cascade.

The pancreas secretes insulin or glucagon in response to changes in blood glucose.

Each cell type of the islets produces a single hormone: α-cells produce glucagon; β-cells, insulin; and δ-cells, somatostatin.

Insulin secretion

When blood glucose rises, GLUT2 transporters carry glucose into the b-cells, where it is immediately converted to glucose 6-phosphate by hexokinase IV (glucokinase) and enters glycolysis. The increased rate of glucose catabolism raises [ATP], causing the closing of ATP-gated K+ channels in the plasma membrane. Reduced efflux of K+ depolarizes the membrane, thereby opening voltage-sensitive Ca2+ channels in the plasma membrane. The resulting influx of Ca2+ triggers the release of insulin by exocytosis.

Insulin lowers blood glucose by stimulating glucose uptake by the tissues; the reduced blood glucose is detected by the β-cell as a diminished flux through the hexokinase reaction; this slows or stops the release of insulin. This feedback regulation holds blood glucose concentration nearly constant despite large fluctuations in dietary intake.

 

Insulin counters high blood glucose

Insulin stimulates glucose uptake by muscle and adipose tissue, where the glucose is converted to glucose 6-phosphate. In the liver, insulin also activates glycogen synthase and inactivates glycogen phosphorylase, so that much of the glucose 6-phosphate is channelled into glycogen.

Diabetes mellitus, caused by a deficiency in the secretion or action of insulin, is a relatively common disease. There are two major clinical classes of diabetes mellitus: type I diabetes, or insulin-dependent diabetes mellitus (IDDM), and type II diabetes, or non-insulin-dependent diabetes mellitus (NIDDM), also called insulin-resistant diabetes. In type I diabetes, the disease begins early in life and quickly becomes severe. IDDM requires insulin therapy and careful, lifelong control of the balance between dietary intake and insulin dose.

Characteristic symptoms of type I (and type II) diabetes are excessive thirst and frequent urination (polyuria), leading to the intake of large volumes of water (polydipsia)

Type II diabetes is slow to develop (typically in older, obese individuals), and the symptoms are milder.

The Effects of Enzyme Inhibitors

Enzymes can be inhibited

  • competitively, when the substrate and inhibitor compete for binding to the same active site or
  • noncompetitively, when the inhibitor binds somewhere else on the enzyme molecule reducing its efficiency.

The distinction can be determined by plotting enzyme activity with and without the inhibitor present.

Competitive Inhibition

In the presence of a competitive inhibitor, it takes a higher substrate concentration to achieve the same velocities that were reached in its absence. So while Vmax can still be reached if sufficient substrate is available, one-half Vmax requires a higher [S] than before and thus Km is larger.

Noncompetitive Inhibition

With noncompetitive inhibition, enzyme molecules that have been bound by the inhibitor are taken out

  • enzyme rate (velocity) is reduced for all values of [S], including
  • Vmax and one-half Vmax but
  • Km remains unchanged because the active site of those enzyme molecules that have not been inhibited is unchanged.

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